Archive for February, 2009

“I was cured” : Medicine and Misunderstanding

Saturday, February 14th, 2009

THE question of whether we are cured by a medicine or treatment can be a surprisingly slippery one. Most people instinctually trust their internal experiences and their ability to link cause and effect. If they took a pill and then soon felt better they assume that the pill must have been the cause of their improvement. Unfortunately, the placebo effect (which causes people feel better entirely due to their expectations of feeling better), as well as a variety of other related effects expose the subtle but serious flaws in this reasoning. Matters get even worse when it is not even our own experiences that we are relying on, but rather the testimonials of others. Consider the following points:

(1) When people are treated with sugar pills or other inert substances but are told they are taking genuine medicine they frequently report that their symptoms improve or disappear. The size of this effect depends on which disorder is being treated, and perhaps also on psychological factors such as how many sugar pills were taken, whether the pills appeared to be of a known brand, and even the color of the pills . It is debated how strong the true placebo effect really is and how much of people’s reported improvement is due to other factors (such as patients misreporting their symptoms, experimenter bias, the subjectivity of symptoms, reversion to the mean, self-termination of disease, natural symptom fluctuations, etc.), but none the less, a large number of studies have made it abundantly clear that bogus treatments frequently cause people to report feeling better . If a friend says that a medicine made them feel better, that response is consistent with what people often say when they receive no medicine at all.

(2) Many common conditions, such as the cold and flu, are self-terminating, meaning that you will typically get better from them no matter what treatment is taken. Suppose, for example, that I give you powdered asparagus as an experimental (and bogus) treatment for the flu. If you happen to feel better the next morning and have faith in the curative powers of that green vegetable or my (non-existent) healing powers, you may attribute your improved condition to the treatment even if you would have felt just as well had you taken nothing at all. Different people can have very different responses to the same disease, and whereas one person will get sick for only a very short period, another person’s symptoms will linger for much longer. Hence, it can be very difficult to tell whether your body has been cured by a treatment or whether your body has simply healed itself.

(3) Our lives tend to fluctuate so much that it can be extremely challenging to sort out which of the changes in our behavior or bodies are responsible for the changes in the way we feel. Did I feel better because I started sleeping more, or because of that new medicine I’ve been taking, or because I’ve lost weight, or because I am less stressed, or because my hormone levels have changed, or simply because of natural fluctuations in my illness? Questions like these often cannot be answered with confidence.

(4) Many symptoms that we experience, such as pain, stress and fatigue are subjective in nature, and therefore are difficult to track, remember accurately, and explain. Is the pain I now experience really less severe than it used to be, or is it just a different sort of pain? Am I really feeling better than I was three months ago, or have I simply forgotten what I felt like back then? Is my illness cured, or are my symptoms just bothering me less this week?

(5) Diagnoses are often tentative. When you go to the doctor with flu like symptoms, she will probably tell you that you have the flu. However, there are many different strains of the flu, each with their own unique characteristics, and there are many diseases that cause flu-like symptoms. She tells you that you have the flu because that seems the most likely to her given the evidence available, but that does not mean that she is definitely right. While medical technology today has some excellent diagnostic tools, in many cases they are not used for what appear to be minor ailments (due to cost considerations), and some diseases, such as Lyme disease, can be very tricky to diagnose. Furthermore, even when effective tests do exist, they never have 100% accuracy. Unfortunately, if you do not know with complete confidence what disease a person is suffering from, you can never know with complete confidence whether the treatment they were given was effective. Sometimes self-terminating illnesses will be mistaken for treatable, but non-self terminating ones, leading a patient to the mistaken impression that they have been cured by their medication when in fact it was useless.

To illustrate the problem of misdiagnosis, consider the case of a man who tests positive on the PSA test, which is considered to be “the most effective test currently available for the early detection of prostate cancer.” Upon hearing this frightening news, let’s assume our man (who prefers an “alternative and holistic” approach to medicine)  seeks out his neighborhood naturopath who grinds some roots up into a paste for him. After taking this concoction for a year, the man goes back to his practitioner only to discover that his prostate cancer is “cured”. It would not be surprising if we soon find this “lucky” fellow touting his “miraculous healing” at dinner parties or selling the amazing curative root paste via informercials or on the internet. But by far the most likely explanation for the man’s healthy state is that he never had prostate cancer in the first place, as about 7 out of 10 people who have positive PSA test results do not have the disease. When we consider scenarios like this one, it is not difficult to see why there should be a large number of well meaning individuals who tout suspicious and likely worthless miracle treatments cures. There will always be those individuals who seemed to recover from an incurable disease upon taking sham medicine simply due to the fact that they never had the illness in the first place.

(6) Amazingly, incredibly, astoundingly coincidental and unlucky things do happen. If I were to roll a ten sided die ten times, it is possible that it land on each digit of my telephone number in order. The odds of this occurring are ten billion to one against, but it definitely could happen. In fact, with a world population of over five billion people, with each of these people witnessing many different events everyday, we should expect occurrences at this enormous level of coincidence and absurdity to happen on a daily basis. With the rate at which remarkable stories travels in our connected world, it is not unlikely that information about at least a few of these true but seemingly impossible events will eventually find its way to us. So what are you to think if your friend’s typically deadly cancer suddenly disappears? If a misdiagnosis can be ruled out, then after taking the time to rejoice in your friend’s wonderful good fortune you can be further awed by considering the shockingly unlikely event that you had the opportunity to witness.

(7) Anyone who has spent much time around humans should know that their testimony is not always without error. We exaggerate, we misremember, we misinterpret events, we draw false conclusions, we extrapolate from tiny amounts of data, sometimes we even lie. When a friend tells you that his headaches were cured by taking some vitamins, does he really know that to be the case? Perhaps his headaches only felt better after taking the pills but were not actually cured, and he simply is trying to tell a more compelling story. Or perhaps he misinterpreted the events and the headaches just happened to get better for some other reason. Who knows? Maybe he’s even got a case of them in the car that he’s “willing” to sell you.

(8) People are much more likely to talk about the medicines that cured their ills than those that they took for a while with no results. Hence, when a friend recommends a miracle diet to us that “worked for her”, it is good to ask ourselves how many other people we know who tried the same diet with little result. Even if we could poll all of our friends who have tried the diet and ask them what they thought of it, such an informal study would lack the rigorous controls, careful population selection, and statistical analysis used in real research studies that would allow us to draw firm conclusions from it.

(9) For chronic or long term conditions it is not uncommon for people to only seek out treatment when their symptoms are “acting up”, or are particularly worse than usual. Of course, that means that no matter what treatment is given their symptoms are likely to improve (and sometimes rapidly) by falling back down to their usual or average level of discomfort. This phenomenon is sometimes referred to as “reversion to the mean”. Unfortunately, a patient may misinterpret this return to their usual level as an improvement caused by whatever treatment they were given.

Hopefully, after this discussion, it will be clear that when someone says “I was cured”, what they usually should have said is “I feel better”, since linking cause to effect when it comes to medicine can be such a difficult task. When someone tells you that they know a treatment works because it worked for them, it may be helpful to remind yourself of all the ways mentioned above that confusion can occur, and be cautiously skeptical until you can put your hands on much stronger evidence of the treatments efficacy. For all of the reasons above, it is remarkably easy to find someone who believes they have benefited or claims to have benefited from a particular treatment, and hence testimonials are extremely weak forms of evidence. Any website that attempts to use testimonials to sell treatments for medical problems should be viewed with extreme suspicion!

The only way to know with much confidence that a treatment is reliably effective for a particular disorder is to try it on a large group of people (preferably hundreds or even thousands). To rule out the possibility of all of the effects mentioned above it is absolutely crucial that the study be “controlled” by giving half of the population (chosen at random) the real treatment under consideration, and giving the other half a placebo or previously established standard treatment. Since a patient’s expectations can effect their reported symptoms, the study will also needed to be “blind” if possible so that no patient knows which of the treatments he is receiving. Better yet, the study should be “double-blind” so that even the researchers and those administering the treatment do not know which treatment is given to each test subject. This helps prevent a subject’s reported symptoms from being influenced by the expectations of those administering treatment, and helps prevent researchers from accidently injecting their biases into the data. Finally, the results of the study should be analyzed by a statistician who can then determine how sure one can be that the treatment under consideration is truly better than a placebo or other standard treatments. Ideally, even the statistician should not know which treatment is which (this is sometimes known as a “triple-blind” experiment) so that her preconceived notions cannot effect her analysis. At last, the results should be published in an established peer reviewed journal regardless of  whether the results were negative or positive, so that others can examine the study for methodological flaws, and so that other researchers can easily see the conclusions of all studies relating to a given subject. All too often negative results are never published, which can greatly mislead other researchers about the true effectiveness of treatments. Sometimes an ineffectual treatment will be lent a false air of legitimacy when researchers study it using small, uncontrolled, unrandomized and unblinded trials, and then publishing only those result that show the treatment is effective while trashing the negative ones. Hence, to the untrained observer it may seem as though the medicine has been “scientifically proven” to work, when in fact nothing has been demonstrated except that badly designed studies lead people to false conclusions. Tactics such as these may explain the continued existence of some useless forms of alternative medicine that are popular today.

Unfortunately it is quite common (especially in the area of alternative medicine) that the rigorous protocols just mentioned are neglected or glossed over. While it is certainly the case that some treatments which have not yet been tested in large, randomized, controlled, blinded, peer reviewed studies do in fact work, there is no substantial reason for you to believe that they do! Eventually someone will get around to doing the tests, and until that time your health is very likely going to be a lot better off if you stick to only those treatments that have been carefully and painstakingly demonstrated to be effective. Even large and well designed studies occasionally come to false conclusions due to the random nature of testing, human error and the complexity of biological systems, but the evidence derived from good studies should be hundreds or thousands of times more convincing than mere anecdotes or personal experience. Since humans do often make mistakes, and occasionally corrupt studies by purposefully or subconsciously injecting their own biases into the data, the very best thing is to wait until multiple, independent studies have been performed by different researchers that come to the same conclusion. Of course, extra caution is called for when dealing with those who have a monetary interest in the outcome of their own conclusions. For example, we should be wary if a drug has been studied only by the doctor who invented it, or if The American Journal of Homeopathic Medicine claims that homeopathy should, in many cases, replace the use of conventional medicine.

Evaluating Extraordinary Stories

Tuesday, February 10th, 2009

WHEN someone tells you an extraordinary story, whether it be about miracles, angels, ghosts, aliens, psychics, worldwide conspiracies or anything else far outside the realm of our ordinary experience, it can be very valuable to ask yourself a simple question: “is this claim testable?”

For example, suppose your friend tells you that he had a dream a few days before 9/11 predicting that the Twin Towers would be destroyed by airplanes. Let’s say for the sake of argument that this friend is by and large a trustworthy and rational person who you consider to be a reliable friend.

Naturally we are inclined to want to believe what other people say, especially those we think of as friends. We tell ourselves things like, “he has no reason to make something like this up”, and give people the benefit of the doubt even when their claims seem downright astounding. But, its important to remind ourselves that we humans are very far from perfect creatures. We all, at times, exaggerate the truth, embellish stories, read into random coincidences, speculate without much evidence, believe falsehoods, misperceive reality, make logical mistakes, see things, misinterpret events, misremember memories, and delude ourselves. And there are some of us who even confuse dreams with reality, mistake internal experiences for external ones, or hallucinate events that never occurred. So how can we be sure that our friend truly had this prophetic dream?

Perhaps our friend is embellishing his story, and really did dream about the Twin Towers, but not that they would be destroyed by planes. Or maybe the details of the dream are accurate, but it actually happened after 9/11 and he is mistaken about when it had occurred. Or possibly, by some remarkable coincidence, he did have a dream where some buildings were destroyed just before 9/11, but his fuzzy memories of it were replaced by false ones after 9/11 occured (which switched the buildings in his dream with the Twin Towers and inserted airplanes that weren’t originally there). On the other hand, there is also always a chance, if only small one, that my friend made the whole thing up just to have a great story to tell.

Now, we ask ourself the simple question, “is his claim testable?” The fact of the matter is that there are many possible explanations for our friends experience, and the vast majority of them are of the perfectly normal (rather than paranormal) variety. There is no way we will ever be able to know precisely what his dream consisted of, and what is misremembered or embellished. We can never rewind history and see into our friends mind to confirm or deny his story, so ultimately his claim is entirely untestable. We can NEVER be certain that what he says is true… at the very best, we could only say that it is probably at least partially true.

More generally, since unverifiable claims of an extraordinary nature such as this one can never be shown to be true or false, they are not much worth worrying over. To believe these stories whole heartedly would be to underestimate the many reasons why we cannot always believe what people tell us, and would be setting ourselves up to believe in falsehood. We know that many extraordinary  claims that people make are not true (like that astronauts never went to the moon, or that the illuminati secretly rule the world, or that the earth was created 6000 years ago, or that we all accidently eat many spiders while we sleep), so a willingness to believe in extraordinary, untestable claims will almost certainly lead us into being misled. On the other hand, there is little that we can be sure of with absolute certainty, so we cannot be 100% sure that the claims are bogus. A safe rule of thumb seems to be that we should never say that an extraordinary untestable claim is anything better than “most likely, at least partially true”.

On the other hand, sometimes people make extraordinary claims that are in fact testable. In these cases, since verification is possible, why should we ever believe what is claimed until we actually put the claim to the test (or, at least, convince ourselves that other reliable people have done the tests for us). Furthermore, if we can’t perform the test ourself, and can’t find anyone else who has performed it, then why not reserve judgement until that time when the test has been done? There is nothing wrong with thinking, “I don’t know if this is true. I’ll wait until their is more information before making a decision.”

Of course, not all tests are created equal. Unfortunately, many experiments and tests that are conducted (especially by those who are inexperienced in the area of testing, or who have a bias towards a certain result) do not properly rule out all possible alternative explanations to a phenomenon with high probability. If a test is flawed, then even after the test is performed we still cannot know what to believe because multiple seemingly valid hypothesis still exist.

To give one example, suppose that a friend tells me that he can predict whether a coin that is flipped will land on heads or tales. This is clearly a claim that is easily testable, so we choose to put it to the test. We tell my friend to flip a coin one hundred times, each time guessing what it will land on. We then record the results and compare the number of guesses he got right to what we would expect would happen if he was merely guessing. If he gets 52 out of 100 right, then he is very likely mistaken about his supposed power, as such a result is likely to occur by chance alone. On the other hand, if he gets 98 right out of a hundred right, then that seems to be compelling evidence of his skills.

Unfortunately, this not a well designed test. Can you see why? It is because even if my friend guesses 98 out of 100 flips right, it does not rule out all (probable) explanations for the results other than the explanation that he gives us. The problem is that since we allowing him to flip the coin himself, he could be employing slight of hand trickery to force the coin to land one way or another. There are undoubtedly many magicians in the world today who can do this without a spectator ever suspecting. So at this point we are forced to go back to the drawing board and redesign our experiment so that the results are genuinely a conclusive test of his powers.

This time, I use a coin that I acquired myself, and that my friend has never had an opportunity to touch (after all, it is possible to replace a coin with a biased one that is heavier on one side, which would improve his chance of impressive results). During each trial I flip the coin myself, and cover it immediately when it lands on my hand. We also videotape the session so that the tape can be reviewed if any trickery or problems with the protocols of the test are suspected. Ideally, experts in testing and sleight of hand would be consulted, to make sure that no other controls on the experiment are needed, and an expert in statistics should he consulted to help with interpretation of the results. The protocol should be completely laid out beforehand and agreed to by both parties in advance, without permitting any changes to be made at the last minute. Finally, when the test is over, I should review the heads and tails that were achieved, to make sure their aren’t any obvious patterns that could indicate cheating or a biased (weighted) coin.

Once this new, carefully controlled test is complete, I can state with a lot of confidence whether my friend’s claims are justified. If he thinks he can get 75% of the guesses correct, but only gets 51%, then he is probably full of shit. Of course, he could be having an off day, but certainly at that point there would be no reason at all to believe that what he says is true. On the other hand, if he claims that he can achieve 75% accuracy and gets 74%, there is a strong reason to believe he does have the powers he claims.

In conclusion, it is usually fairly straight forward to divide extraordinary claims into the two categories of “testable” and “untestable”. If a claim is testable, then why would we ever believe it before it has been put to the test? There is a straightforward way to verify what is being claimed, so there is no need to simply speculate as to whether it is true. On the other hand, with untestable extraordinary claims we will never truly be certain of their legitimacy. Of course, the more extraordinary the claim is, the more skepticism is warranted. Extraordinary events, by definition, almost never happen, so it should be more difficult for us to believe in them! With untestable claims we can ask ourselves, “why should we ever believe strongly in something that we know cannot be proven?” If we unquestioningly believe we are simply setting ourselves up to be tricked by all the falsehood that eventually comes our way.

Genesis According To Science: The Empirical Creation Story

Sunday, February 8th, 2009

1 In the beginning, the big bang created the heavens.
In the beginning God created the heaven and the earth.
2 The universe was formless and infinitesimal. Plasma hotter than a thousand suns permeated the explosively expanding fabric of space.
And the earth was without form, and void; and darkness was upon the face of the deep. And the Spirit of God moved upon the face of the waters.
3 Inflation slowed, the universe cooled, and there were protons and neutrons.
And God said, Let there be light: and there was light.
4 The particles were good; and were differentiated from anti-particles, becoming ever so slightly more abundant.
And God saw the light, that it was good: and God divided the light from the darkness.
5 The particles were called matter, and the anti-particles were called anti-matter, and there was the beginning and there was the ending of the first millisecond.
And God called the light Day, and the darkness he called Night. And the evening and the morning were the first day.
6 Temperatures plunged as space grew, and matter annihilated anti-matter. Nearly all particles were wiped from the universe, but quadrillions upon quadrillions of photons remained.
And God said, Let there be a firmament in the midst of the waters, and let it divide the waters from the waters.
7 And there were neutrons that bonded with the protons.
And God made the firmament, and divided the waters which were under the firmament from the waters which were above the firmament: and it was so.
8 And there was ionized hydrogen and deuterium, with only a single proton for each. And there was the beginning and there was the ending of the first four minutes.
And God called the firmament Heaven. And the evening and the morning were the second day.
9 And the Universe cooled still more so that electrons could orbit protons, and the first stable atom was born.
And God said, Let the waters under the heaven be gathered together unto one place, and let the dry land appear: and it was so.
10 Photons dislocated from matter, propagating through space for all eternity, to be called the cosmic background radiation.
And God called the dry land Earth; and the gathering together of the waters called he Seas: and God saw that it was good.
11 And there were fluctuations in the uniformity of matter, with gravity seeding galaxies across a billion light years.
And God said, Let the earth bring forth grass, the herb yielding seed, and the fruit tree yielding fruit after his kind, whose seed is in itself, upon the earth: and it was so.
12 Great clouds of gas condensed, and dark matter and dark energy were abundant, and it was good.
And the earth brought forth grass, and herb yielding seed after his kind, and the tree yielding fruit, whose seed was in itself, after his kind: and God saw that it was good.
13 There was the beginning and there was the ending, the first billion years.
And the evening and the morning were the third day.
14 And from gas and dust, great lights formed in the expanse of the heavens, called the stars, which mark the seasons.
And God said, Let there be lights in the firmament of the heaven to divide the day from the night; and let them be for signs, and for seasons, and for days, and years:
15 And they gave their light upon many trillions of coalescing planets.
And let them be for lights in the firmament of the heaven to give light upon the earth: and it was so.
16 And there were moons that formed around the planets, and reflected the light of the suns.
And God made two great lights; the greater light to rule the day, and the lesser light to rule the night: he made the stars also.
17 And so too did the Earth form from the rotating dust cloud of the solar nebula, and the Sun gave it warmth.
And God set them in the firmament of the heaven to give light upon the earth,
18 And the Sun governed the day and the night, and it was good.
And to rule over the day and over the night, and to divide the light from the darkness: and God saw that it was good.
19 There was the beginning and there was the ending, the first nine billion years.
And the evening and the morning were the fourth day.
20 The molten Earth cooled and its crust hardened. An atmosphere formed and condensed, changing Earth into an ocean planet.
And God said, Let the waters bring forth abundantly the moving creature that hath life, and fowl that may fly above the earth in the open firmament of heaven.
21 And lifeless molecules swarmed in the water, colliding, breaking and re-forming in billions of configurations, and it was good.
And God created great whales, and every living creature that moveth, which the waters brought forth abundantly, after their kind, and every winged fowl after his kind: and God saw that it was good.
22 And one of the molecules that formed was a replicator, configured to reshape other molecules in its own likeness. It was fruitful and multiplied itself, filling the waters in the seas.
And God blessed them, saying, Be fruitful, and multiply, and fill the waters in the seas, and let fowl multiply in the earth.
23 There was the beginning and there was the ending, ten billion years.
And the evening and the morning were the fifth day.
24 The replicators copied imperfectly, and most variants died off. But a few, able to copy even faster than their ancestors, proliferated.
And God said, Let the earth bring forth the living creature after his kind, cattle, and creeping thing, and beast of the earth after his kind: and it was so.
25 Materials for replication were scarce and competition was fierce, and only the fittest varieties survived.
And God made the beast of the earth after his kind, and cattle after their kind, and every thing that creepeth upon the earth after his kind: and God saw that it was good.
26 And through myriad minute changes over millions of generations, some evolved the power to destroy and others mechanisms for their defense.
And God said, Let us make man in our image, after our likeness: and let them have dominion over the fish of the sea, and over the fowl of the air, and over the cattle, and over all the earth, and over every creeping thing that creepeth upon the earth.
27 And descendants that banded together were more likely to survive, and from these great colonies arose multicellular organisms.
So God created man in his own image, in the image of God created he him; male and female created he them.
28 The creatures multiplied and photosynthesized. They produced oxygen which transformed the air, and they spread onto the accreting continents.
And God blessed them, and God said unto them, Be fruitful, and multiply, and replenish the earth, and subdue it: and have dominion over the fish of the sea, and over the fowl of the air, and over every living thing that moveth upon the earth.
29 And they became every plant and fish, every insect and reptile, every bird and mammal, forever fighting for the survival of their genes, the remnants of the original replicators.
And God said, Behold, I have given you every herb bearing seed, which is upon the face of all the earth, and every tree, in the which is the fruit of a tree yielding seed; to you it shall be for meat.
30 And there was the platypus and opossum, the mole and wombat, the elephant shrew and elephant, the manatee and armadillo, the mole and bat, the camel and horse, the cat and rabbit, the rat and beaver, the squirrel and guinea pig, the colugos and lemur, the tarsier and gibbon, the orangutan and gorilla, the bonobo and chimpanzee, the homo habilis and homo erectus, the homo rhodesiensis and homo neanderthalensis, and then there was the human.
And to every beast of the earth, and to every fowl of the air, and to every thing that creepeth upon the earth, wherein there is life, I have given every green herb for meat: and it was so.
31 And humans considered themselves the center of all existence. And there was the end, and the beginning, thirteen billion years.
And God saw every thing that he had made, and, behold, it was very good. And the evening and the morning were the sixth day.